Dataset summary

Original publication DOI: https://doi.org/10.1101/2023.01.26.525195
Specific data link: https://figshare.scilifelab.se/articles/dataset/Spatial_Multimodal_Analysis_SMA_-_Spatial_Transcriptomics/22778920
Original abstract: We present a spatial omics approach that merges and expands the capabilities of independently performed in situ assays on a single tissue section. Our spatial multimodal analysis combines histology, mass spectrometry imaging, and spatial transcriptomics to facilitate precise measurements of mRNA transcripts and low-molecular weight metabolites across tissue regions. We demonstrate the potential of our method using murine and human brain samples in the context of dopamine and Parkinson’s disease.

Summary statistics

Slides: 4
Patients: 1
Spots: 19033

How to use

                    
                        # Import spared library
                        import spared 
                        from spared import datasets
                        # Dataset
                        dataset = datasets.get_dataset("vicari_human_striatium", visualize=True)