Dataset summary
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Original publication DOI: https://doi.org/10.17632/2bh5fchcv6.1
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Specific data link: https://data.mendeley.com/datasets/2bh5fchcv6/1
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Original abstract: Visium experiments on a squamous cell carcinoma from a human donor. Four serial 10 µm sections spaced 150 µm apart. Processed sequencing data from 10X Genomics Space Ranger version 1.0.0. A skin biopsy was collected from a patient with suspected squamous cell carcinoma after obtaining informed consent. The diagnosis was histologically verified by a board-certified dermatopathologist. The study protocol was approved by the Institutional Review Board at Stanford University Medical Center (protocol #21750).
Summary statistics
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Slides: 4
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Patients: 1
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Spots: 10374
How to use
# Import spared library
import spared
from spared import datasets
# Dataset
dataset = datasets.get_dataset("abalo_human_squamous_cell_carcinoma", visualize=True)
